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1 Dipartimento di Biologia e Patologia Cellulare e Molecolare c/o Istituto di Endocrinologia ed Oncologia Sperimentale del CNR, Facoltà di Medicina e Chirurgia, Università degli Studi di Napoli Federico II, via Pansini, 5, 80131 Naples, Italy
2 Department of Molecular Virology, Immunology, and Medical Genetics, Comprehensive Cancer Center, Ohio State University, 410 West 12th Avenue, Columbus, Ohio 43210, USA
3 NOGEC (Naples Oncogenomic Center)-CEINGE, Biotecnologie Avanzate-Napoli, and SEMM-European School of Molecular Medicine-Naples Site, via Comunale Margherita, 482, 80145 Naples, Italy
(Correspondence should be addressed to A Fusco, Dipartimento di Biologia e Patologia Cellulare e Molecolare, Facoltà di Medicina e Chirurgia, Università degli Studi di Napoli Federico II, Via S Pansini 5, 80131 Napoli, Italy; Email: afusco{at}napoli.com)
| Abstract |
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| Introduction |
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By the analysis of the genome-wide miR expression profile in human papillary thyroid carcinomas (PTCs), using a microarray (miRNACHIP microarray), we have recently found an aberrant miR expression profile that clearly differentiates PTCs from normal thyroid tissues. It mainly consists in the overexpression of miR-221, miR-222, and miR-181b in PTCs. Functional studies, performed by blocking the miR-221 function and over-expressing miR-221 in human PTC-derived cell lines, suggested a critical role of miR-221 overexpression in thyroid carcinogenesis. In fact, we found a significantly higher number of colonies in the thyroid carcinoma cells transfected with a miR-221 expression vector in comparison with the same cell line transfected with a backbone vector. Consistently, a significant reduction in cell growth was observed when the miR-221 function was blocked by antisense oligonucleotides (Pallante et al. 2006).
Using the algorithm of the bioinformatic programs miRGen (www.diana.pcbi.upenn.edu/miRGen; Megraw et al. 2007), TargetScan (Lewis et al. 2003), Pictar (Krek et al. 2005), and miRanda (John et al. 2004) to predict human miR gene targets, we identified the CDKN1B (p27Kip1) gene as a putative target of miR-221 and miR-222. p27Kip1, a member of the Cip/Kip family which also includes p21Cip1 and p57Kip2, represents a very important regulator of cell cycle (Gu et al. 1993, Polyak et al. 1994, Chen et al. 1995). In fact, the Cip/Kip family together with INK4 proteins (p16INK4a, p15INK4b, p18INK4c, and p19INK4d), belongs to the cyclin-dependent kinase (CDK) inhibitors (Serrano et al. 1993, Guan et al. 1994, Hannon et al. 1994, Hirai et al. 1995). These proteins contrast the activities of CDKs which regulate the mitogen-dependent progression through the first gap phase (G1) and initiation of DNA synthesis (S phase) during the mammalian cell division cycle (Kaldis 2007).
The p27Kip1 alterations have been frequently detected in human neoplasms. In fact, a reduced or absent p27Kip1 expression has been shown in the most aggressive ones (Slingerland & Pagano 2000). Moreover, in several cases, the impairment of the p27Kip1 function is due to a mislocalization of p27Kip1 from the nucleus to the cytoplasm induced by AKT activation (Viglietto et al. 2002). As far as thyroid neoplasias are concerned, a reduction in p27Kip1 protein levels has been previously described in 10 out of 28 papillary carcinomas, 3 out of 9 follicular carcinomas, and 6 out of 8 anaplastic carcinomas. Moreover, 80% of p27Kip1-expressing tumors show an uncommon cytoplasmic localization of p27Kip1 protein, associated with a high Cdk2 activity (Baldassarre et al. 1999).
Here, we demonstrate that miR-221 and miR-222 regulate the p27Kip1 protein levels. This effect was dependent on two target sites in the 3'-untranslated region (UTR) of the p27Kip1 gene. Moreover, the enforced expression of miR-221 stimulates the TPC-1 cells to overcome the G1/S block. Therefore, our data indicate that miR-221 and miR-222, negatively regulating p27Kip1 protein expression, are able to regulate cell cycle.
| Materials and methods |
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The human thyroid carcinoma cell line TPC-1 (Tanaka et al. 1987) and HeLa cells were grown in Dulbeccos modified Eagles medium (Gibco Laboratories) containing 10% fetal bovine serum (Gibco Laboratories), glutamine (Gibco Laboratories), and ampicillin/streptomycin (Gibco Laboratories) in a 5% CO2 atmosphere. For transfection assay, TPC-1 and HeLa cells were plated at a density of 2.5 x 105 cells per well, in six-well plates, with three replicate wells for each condition, and transfected with Lipofectamine 2000 (Invitrogen) according to the manufacturers instructions. 2'-O-Me-221-GAAACCCAGCAGACAAUGUAGCUL oligonucleotide, 2'-O-Me-222-GAGACCCAGUAGCCAGAU-GUAGCUL, and 2'-O-Me-enhanced green fluorescent protein (eGFP)-AAGGCAAGCUGACCCUGAAGUL (as control) were used in the antisense experiments. All 2'-O-methyl oligonucleotides were synthesized by Fidelity Systems, Inc. (Gaithersburg, MD, USA) as described previously (Meister et al. 2004) and were used at 200 nM concentration. RNA oligonucleotides corresponding to pre-miR negative control (#AM17110, Ambion, Austin, TX, USA), pre-miR-221, and pre-miR-222 were used at 100 nM final concentration in the sense experiments.
Protein extraction, western blotting, and antibodies
The cells were scraped in ice-cold PBS, and, subsequently, lysed in ice-cold NP40 lysis buffer (0.5% NP40, 50 mM HEPES (pH 7), 250 mM NaCl, 5 mM EDTA, 50 mM NaF, 0.5 mM Na3VO4, 0.5 mM phenylmethylsulfonyl fluoride, Complete inhibitor (Roche)). Proteins were analyzed on polyacrylamide gel, transferred onto nitrocellulose membranes (Bio-Rad), incubated with specific primary antibodies, and visualized using enhanced chemiluminescence (GE Healthcare, Piscataway, NJ, USA). The antibodies used in this work were: anti-p27Kip1 (sc-C-19, Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), anti-vinculin (sc-7649, Santa Cruz Biotechnology Inc.), and anti-GAPDH (Calbiochem, San Diego, CA, USA).
RNA extraction and quantitative reverse transcription (qRT)-PCR
Total RNA isolation from human tissues and cells was performed with Trizol (Invitrogen) according to the manufacturers instructions. RNA was extracted from fresh specimens after pulverizing the tumors in a stainless steel mortar and pestle which were chilled on dry ice. The integrity of the RNA was assessed by denaturing agarose gel electrophoresis. RT-PCR analysis was performed on a panel of PTC samples of human thyroid origin and on transfected cells by using AmpliTaq DNA Polymerase (Applied Biosystems, Foster City, CA, USA) and the mirVana qRT-PCR miRNA Detection Kit (Ambion) following the manufacturers instructions. Reactions contained mir-Vana qRT-PCR Primer Sets (Ambion) specific for miR-221, miR-222, and U6 (used to normalize RNA levels). qRT-PCR for p27Kip1 mRNA was performed by using TaqMan Gene Expression Assay (Ambion).
Flow cytometric analysis
TPC-1 cells were transfected with miR-221 and the scrambled oligonucleotides, deprived of serum, and analyzed by flow cytometry after 48 h, as described. Briefly, cells were harvested in PBS containing 2 mmol/l EDTA, washed once with PBS, and fixed for 2 h in cold ethanol (70%). Fixed cells were washed once in PBS and treated with 40 µg/ml RNase A in PBS for 30 min. They were then washed once in PBS and stained with 50 µg/ml propidium iodide (Roche). Stained cells were analyzed with a fluorescence-activated cell sorter (FACS) Calibur (Becton-Dickinson, Franklin Lakes, NJ, USA), and the data were analyzed using a mod-fit cell cycle analysis program.
Plasmids and constructs
The 464 bp 3'-UTR region of p27Kip1 gene, including binding site for miR-221/222, was amplified from HEK293 cells by using the following primers:
p27 gene-3'-UTR-XbaI-Fw, 5'-AATTTCTA-GAGCTGACTTCATGGAATGGAC-3'and p27 gene-3'-3'UTR-XbaI-Rev, 5'-AATTTCTAGACAC-CAGATCTCCCAAATGAG-3'.
The amplified fragment was cloned into pGL3-Control firefly luciferase reporter vector (Promega) at the XbaI site.
Deletions into the miR-221/222-binding sites of the p27 gene 3'-UTR were introduced by using Quik-Change Site-Directed Mutagenesis Kit (Stratagene, La Jolla, CA, USA) following the manufacturers instructions. The primers used were:
p27 gene mut1-Fw, 5'-AAGCGTTGGATTATG-CAATTAGGTTTTTCC-3'; p27 gene mut1-Rev, 5'-CCTAATTGCATAATCCAACGCTTTTAGAGGC-AGATC-3'; p27 gene mut2-Fw, 5'-TTACCTTTTAGC-CACATAAACTTTGGGGAAGGGAGGGCAGGGT- 3'; and p27 gene mut2-Rev, 5'-AGTTTATGTGC-TAAAAGGTAAAAACTATATACACAGGTAGT-3'.
Transfection efficiency was corrected by a Renilla luciferase vector (pRL-CMV, Promega).
Luciferase target assays
TPC-1 and HeLa cells were co-transfected in 12-well plates with the modified firefly luciferase vector described above, the Renilla luciferase reporter plasmid and with the RNA oligonucleotides. Firefly and Renilla luciferase activities were measured 24 h after transfection with the Dual-Luciferase Reporter Assay System (Promega). Firefly activity was normalized to Renilla activity to control the transfection efficiency.
| Results |
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Our previous studies demonstrated that blockage of the miR-221 and miR-222 was able to inhibit the growth of a thyroid papillary carcinoma cell line, and that the growth of the same cells was stimulated by miR-221 and miR-222 overexpression (Pallante et al. 2006, Visone et al. unpublished data). These results suggested that the miRs might participate in or simply be associated with regulatory events involved in the modulation of gene products having a role in cell growth regulation. Using bioinformatic tools (miRGen, TargetScan, Pictar, and miRanda) to search for potential mRNA targets of human miR-221 and miR-222, we identified several genes as being potentially targeted by these miRs. Among them, we selected the CDKN1B (CDK inhibitor 1B (p27Kip1, Kip1) on its acknowledged role in cell cycle regulation. This choice was also dependent on previous results showing that miR-221 and miR-222 play an important role in the positive regulation of thyroid cell growth (Pallante et al. 2006), and that reduced p27 protein levels were detected in a significant number of human thyroid carcinomas in the absence of significant changes in p27 mRNA levels (Baldassarre et al. 1999).
Two sites in the 3'-UTR of the CDKN1B gene that match the miR-221 and miR-222 seed sequences were predicted (Fig. 1A
). To validate the influence of miR-221/222 cluster on the p27Kip1 target, we transfected the miR-221 and/or miR-222, or their inhibitors, as 2'-O-Me-221 and/or 2'-O-Me-222, into the TPC-1 thyroid papillary carcinoma cell line and HeLa cells, and we searched for changes in p27Kip1 protein levels by western blot analysis. Introduction of both miR-221 and miR-222 decreased p27Kip1 protein levels (Fig. 1B
). Conversely, the inhibitors, 2'-O-Me-221 and 2'-O-Me-222, increased p27Kip1 protein amounts. No significant additive effects were observed when the same cells were transfected with both the miRs or their inhibitors (Fig. 1B
). Interestingly, no significant changes in the p27Kip1 mRNA levels were observed in the cells either transfected with the miR-221 and miR-222 or their inhibitors (Fig. 1C
). This result validates a post-transcriptional regulation of the p27Kip1 protein by miR-221 and miR-222, and also excludes their role in p27Kip1 mRNA degradation.
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Since the p27Kip1 protein has a key role in the cell cycle, particularly in the cell growth arrest at the G1/S transition, we have analyzed the possible role of miR-221 as a candidate cell cycle regulator. Therefore, the TPC-1 cells have been transfected either with miR-221 or with the scrambled control oligonucleotide, deprived of serum, and then assayed by flow cytometric analysis after 48 and 72 h of starvation. A significant increase in the transition from the G1 to the S phase was observed in miR-221-treated cells when compared with scrambled-treated cells at 48 h post-starvation (Fig. 3A
). In fact, as far as the scrambled-treated TPC-1 cells are concerned, 67.41% of the cells were counted in G0/G1 and 3.37% in the S phase, whereas the miR-221-treated cells showed 56.70% of the cells in G0/G1 and 19.77% in S phase. Western blot confirmed the reduction in p27Kip1 protein level in miR-221-treated TPC-1 cells (Fig. 3B
). Similar results were obtained when the TPC-1 cells were transfected with the miR-222 oligonucleotide (data not shown).
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Previous works have constantly shown a reduction in p27Kip1 protein levels in human PTCs using different technologies such as immunohistochemistry and western blotting (Baldassarre et al. 1999, Tallini et al. 1999, Saltman et al. 2006). Moreover, two recent reports have evidenced a drastic increase in the miR-221 and miR-222 in the majority of PTCs (He et al. 2005, Pallante et al. 2006). These results lead to the hypothesis that the increase in the miR-221 and miR-222 might, at least partially, account for the p27Kip1-reduced levels in PTCs. To verify this hypothesis, we have analyzed the p27Kip1 and the miR-221 and miR-222 levels in a set of PTCs. As shown in the Fig. 4A
, decreased p27Kip1 protein levels were observed in 8 out of 11 PTCs, most of them showing an increase in miR-221 and miR-222 (Fig. 4B
) expression in the absence of any significant changes in the CDKN1B mRNA levels (Fig. 4C
). Interestingly, the PTC samples, such as PTC 10, 26, and 56, showing a drastic reduction in p27Kip1 protein expression, present the highest miR-221 and miR-222 levels. Therefore, these results suggest that the miR-221 and miR-222 overexpression may have a role in the decreased expression of the p27Kip1 protein in PTCs.
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| Discussion |
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Here, we report a novel mechanism regulating p27Kip1 protein levels that is based on the over-expression of the miR-221 and miR-222, previously described in PTCs (He et al. 2005, Pallante et al. 2006). These miRs have a matched sequence in the 3'-UTR of the p27Kip1 gene, and may regulate the specific p27Kip1 mRNA translation, and then p27Kip1 protein levels. In fact, we show that the enforced expression of the miR-221 and miR-222 significantly decreased the p27Kip1 protein levels. This effect seems due to an inhibition of the p27Kip1 mRNA translation process since no significant changes were observed in the mRNA levels after miR-221 and miR-222 treatments. Consistent with this result, the transfection with the miR-221 and miR-222 inhibitors leads to a significant increase in the p27Kip1 protein level. Moreover, this result is shown by us in two different cell lines: the PTC-derived TPC-1 cells and the HeLa cells. The choice of the TPC-1 cell line for these studies was dependent on the presence of a significant amount of the p27Kip1 at nuclear level, then keeping its role on the cell cycle regulation, in this cell line, whereas p27Kip1 was detected only in the cytoplasm of the other thyroid carcinoma cell lines, then unable to block the transition G1/S (Baldassarre et al. 1999). We showed that miR-221 and miR-222 directly regulate the p27Kip1 mRNA translation since they negatively regulated the expression of a p27Kip1 gene 3'-UTR-based reporter construct and this regulation is dependent on two target sites located in the p27Kip1 gene 3'-UTR. In fact, the mutations in both these sites make the reporter construct insensitive to the miR-221 and miR-222 expression. However, it cannot be excluded that miR-221/222 could be also indirectly involved in the regulation of the p27Kip1 protein levels by targeting the genes coding for proteins involved in p27Kip1 protein degradation.
The role of the miR-221/222 cluster in p27Kip1 protein regulation has an important implication since it can account for the reduced p27Kip1 expression in several tumors. In fact, overexpression of these miRs has been already described in PTCs and other tumors (He et al. 2005, Pallante et al. 2006, Volinia et al. 2006, Lee et al. 2007). According to this hypothesis, we show a significant inverse correlation between p27Kip1 protein levels and miR-221 and miR-222 expression in PTCs. This represents another example of miRs with potential oncogenic properties that act through the repression of a tumor suppressor gene (Calin & Croce 2006, Meng et al. 2006). Furthermore, the results shown here indicate that miR-221 and miR-222 play an important role in cell cycle regulation. In fact, miR-221 overexpression drives TPC-1 cells to the S phase overcoming the block in G1 under serum-free conditions.
We would like to point out that p27 is not the only target for miR-221 and miR-222. It has been previously shown (He et al. 2005) that c-Kit is a target of these miRs and consistently, they show that c-Kit expression correlates in most of the PTCs with miR-221/222 overexpression. However, it remains still to be defined the role of the loss of c-Kit expression in thyroid cell proliferation and carcinogenesis. On the basis of the Bioinformatic Analysis, miR-221 and miR-222 may regulate other target genes that still need to be identified and biologically validated, with a critical role in cell proliferation. Therefore, miR-221/222 overexpression likely has a key role in the process of thyroid carcinogenesis. This hypothesis is further supported by the finding that an increased miR-221 and miR-222 expression was observed in the apparently normal thyroid tissues adjacent to the PTC lesions (He et al. 2005). The generation and characterization of transgenic mice overexpressing miR-221 and miR-222, in progress in our laboratory, should give the appropriate answer to this question.
While this manuscript was submitted for publication, a paper demonstrating that the p27Kip1 is a target of miR-221 and miR-222 has been published. The authors show that the miR-221/222 expression is able to reduce the p27Kip1 protein level and modify the growth potential of prostate carcinoma cells by inducing a G1 to S shift in the cell cycle, and enhance their colony forming potential (Galardi et al. 2007). These data appear completely consistent with the results shown by us here and previously in thyroid cancer (Pallante et al. 2006).
It is also noteworthy to observe that the critical functions of the miR-221/222 cluster, reported here, may also open new therapeutic perspectives. In fact, new innovative therapeutic approaches may be based on the restoration of the normal miR-221 and miR-222 levels in the cancers overexpressing them by the administration of synthetic antisense oligonucleotides, complementary to mature endogenous miRs.
In conclusion, taken together, the results shown here indicate a novel mechanism of regulation of the p27Kip1 protein levels, and then of the cell cycle, mediated by miR-221 and miR-222 overexpression.
| Acknowledgements |
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