|
|
||||||||
1 Digestive and Liver Disease Unit, II Medical School, University La Sapienza, Rome, Italy
2 Molecular Oncology Unit, Cancer Research UK Clinical Centre, Barts and the London School of Medicine and Dentistry, John Vane Science Building, Charterhouse Square, London EC1 6BQ, UK
3 Department of Surgery, University of Leicester, Leicester Royal Infirmary, Leicester, UK
4 Department of Pathology and Laboratory Medicine, University of Parma, Parma, Italy
(Requests for offprints should be addressed to N R Lemoine; Email: nick.lemoine{at}cancer.org.uk)
| Abstract |
|---|
|
|
|---|
| Introduction |
|---|
|
|
|---|
The molecular pathways underlying the development and progression of PETs are poorly understood, with those genes most commonly associated with exocrine neoplasms seemingly uninvolved (Corleto et al. 2002).
Global expression profiling has recently been employed to investigate primary, non-metastatic, well-differentiated NF PETs (Maitra et al. 2003) and a mixed group of F/NF multiple endocrine neoplasia type I (MEN-I)-related PETs compared with pancreatic islets (Dilley et al. 2005). A further mixed group of F/NF well-differentiated PETs has been analysed, in order to compare profiles of primary lesions with and without metastatic ability (Hansel et al. 2004). Others have compared expression profiles of pooled biopsy material of PETs with that obtained from other pancreatic pathologies (Bloomston et al. 2004). However, some of these studies did not provide clinical or histopathological data sufficient to determine the clinical behaviour of the investigated patients, and none of them were specifically aimed at deciphering alterations occurring in patients with progressive disease, or analysed the expression profiles of their liver metastases.
The present study was therefore aimed at investigating the gene expression profiles of a more uniform and aggressive series of sporadic, NF PETs and, for the first time, their liver metastases, on the most comprehensive Affymetrix human genome U133 A (U133A) and U133B GeneChip arrays as, for this well-defined subset of tumours, the biology is poorly understood and new molecular targets are very much needed.
| Materials and methods |
|---|
|
|
|---|
Freshly frozen tissue blocks of 15 samples (eight primary lesions and seven liver metastases) from ten individual PET patients undergoing either explorative or radical surgery were obtained from the Digestive and Liver Disease Unit, Rome University with full ethical approval. Sample selection was based on: (1) exclusion of F and MEN-I-associated tumours and (2) inclusion of those with liver metastases and progressive disease (spontaneous tumour growth, according to the World Health Organization (WHO) definition), documented by previously described imaging procedures (Panzuto et al. 2003). According to the WHO (Solcia et al. 2000), there were seven well-differentiated endocrine carcinomas (WDEC) and three poorly differentiated endocrine carcinomas (PDEC). (All diagnoses were reviewed by an expert pathologist (C B) through histological/immunohistochemical examination.). All primary lesions were
3 cm in diameter and all specimens had a Ki-67 score >2% (Table 1
), confirming the homogeneously aggressive behaviour of this series. As previously described (Crnogorac-Jurcevic et al. 2003), frozen samples were evaluated by haematoxylin and eosin (H&E)-stained sections of each individual block and, if necessary, macrodissected by trimming in a cryostat to enrich tumour cellularity >70% as confirmed by repeated stained sections during cryosectioning.
|
RNA preparation
RNA was isolated sequentially from tissue samples and cell lines using Trizol solution (Gibco BRL, Life Technologies Inc., Frederick, MA, USA) using the manufacturers recommendations. The quality of RNA from each sample was verified by running an aliquot on the Agilent 2100 bioanalyzer (Agilent Technology, Palo Alto, CA, USA).
Probe synthesis and hybridization
Double-stranded cDNA was synthesized from 10 µg total RNA with the SuperScript choice system (Invitrogen). Probe preparation, hybridization to a human test array, and subsequently to human U133A and B GeneChip set arrays, and scanning were all performed in accordance with the standard Affymetrix protocols (http://www.affymetrix.com/support/technical/manual/expression_manual.affx).
Scanned images were inspected and analyzed using established quality control measures.
Data analysis
The analysis of the array data was carried out within the R statistical environment, freely available under GNU General Public Licence (http://www.r-project.org) using bioconductor libraries.
After generating log-transformed images from the *.CEL. files, hybridization quality was checked for spatial artefacts. One sample (NET-M6) was excluded at this stage, because of low quality of hybridization, and no further aliquots were available.
The U133A and B chips were independently normalized by the quantiles method (Bolstad et al. 2003) and background corrected using robust multi-array analysis (RMA) (Irizarry et al. 2003). The probe level data were summarized using median polishing, which results in log2 scale transformed data. The quality of the ensuing data was then inspected using a combination of boxplots, histograms and quantile plots to ensure a Gaussian-like distribution.
Differential genes were identified by the Welch two sample t-test, with subsequent P value correction using the false discovery rate (FDR) method (Benjamini & Hochberg 1995). Selected differential genes had an FDR corrected P value <0.05.
When sorted by variance, the top 2500 genes from U133A and B chips were combined to construct a dissimilarity matrix using Euclidean distance. Sample-wise agglomerative hierarchical clustering was performed using average linkage on a dissimilarity matrix, constructed using 1 p, where p is the sample pair-wise Pearson correlation coefficient. The dissimilarity matrix was also employed for three-dimensional visualization of the data using multidimensional scaling (MDS).
The absolute distance (Euclidean) matrix was used for both the hierarchical clustering and MDS, as the normalization procedure (quantiles) guarantees that all arrays are approximately on the same scale, thus negating the need to measure a similarity of pattern (correlation).
Data mining
We performed a PubMed search for the differentially expressed genes and the terms Cancer, Pancreatic Endocrine, Endocrine Tumo(u)rs or Neuroendocrine Tumo(u)rs or Pancreas, and all possible gene aliases through the SOURCE database (http://genome-www5.stanford.edu/cgi-bin/source/sourceSearch) and compared our findings with those of previous manuscripts regarding expression profiles and genomics of pancreatic islets or PETs (Jin et al. 2003, Maitra et al. 2003, Bloomston et al. 2004, Hansel et al. 2004, Wang et al. 2004, Dilley et al. 2005).
Gene ontology of the differentially expressed genes was investigated through the publicly available Amigo database (http://www.godatabase.org/cgi-bin/amigo/go).
Real-time quantitative PCR (QRT-PCR)
QRT-PCR was performed on the same samples employed for the microarray experiments, except for NET-P6 for which there was not enough material, and with the addition of NET-M5 for which there was not enough RNA for the array analysis. cDNAs were synthesized from 1 µg total RNA using random hexamers and Taqman reverse transcription kit (Applied Biosystems, Foster City, CA, USA) according to the manufacturers protocol. PCR reactions containing 10 ng cDNA, SYBR Green sequence detection master mix reagent (Applied Biosystems) and gene-specific primers were assayed on an ABI 7700 PRISM sequence detection system (Applied Biosystems). The target genes were carried out using five dilutions of reverse transcribed universal human reference RNA (Stratagene, La Jolla, CA, USA) to construct a standard curve. All reactions were performed in triplicate. Gene-specific primers designed using Primer Express (Applied Biosystems) are shown in Table 2
. PCR product accumulation was measured in real time by the increase in fluorescence intensity of SYBR green. Data were analysed using the sequence detector program v1.7 a (Applied Biosystems). Serial dilutions of cDNA from universal RNA were used to generate a standard curve for each target gene and 18s. The standard curves were then used to determine expression values for each target gene.
|
Immunohistochemical analysis (IHC) was performed on formalin-fixed, paraffin-embedded tissue sections from an independent set of 37 PETs (23 primaries, two nodal and 12 liver metastases). All samples except for five insulinomas were from patients with NF PETs. There were eight well-differentiated endocrine tumours, 26 WDECs and three PDECs. Furthermore, 15 non-pancreatic NETs (eight primaries and seven metastases), including five type-3 gastric carcinoids, one duodenal gastrinoma, five ileal and two rectal carcinoids and one poorly differentiated ovarian endocrine carcinoma, were employed. All samples were first stained with H&E to verify the histology, and subsequently with several markers and Ki-67 as previously described (Capurso et al. 2005). Commercial monoclonal antibodies against bridging integrator 1 (BIN1) and LCK were optimized on human brain and tonsil respectively. The immunoreactivity for BIN1 and LCK was evaluated on a semiquantitative scale considering both the extent (score: 04 for positive cells respectively <5%, 520%, 2040%, 4080% and >80%) and the intensity (score: 03) of staining. The product of both was used to obtain a final immunostaining score (range: 012). Samples with a score >4 were considered positive. The antibodies employed and their working dilutions are reported in Table 3
. The immunostaining was visualized using the EnVision polymer method (Dako Cytomation, Hamburg, Germany) followed by haematoxylin counterstaining.
|
IHC scores, expressed as mean (95% confidence interval) were evaluated by t-test. Proportions of subsets of patients, positive/negative at IHC, were compared by Fishers exact test. Correlation between microarray and QRT-PCR data was evaluated by Spearman rank correlation test. A P value <0.05 was considered statistically significant.
| Results |
|---|
|
|
|---|
The 20 samples were classified into four groups: purified islets (I; four samples), primary lesions (P; eight samples), liver metastases (M; five samples) and cell lines (three samples). Islets were used as a baseline reference to which both primary and metastases were compared (IvsPM comparison), in an attempt to best capture the transcriptional modifications occurring in aggressive PETs. In addition, primary lesions were compared with metastases in order to decipher changes potentially related to disease progression.
At a significance level delimited by an FDR-corrected P value <0.05, we identified 990 individual, annotated genes (794 from U133A and 196 from B chip), of which 667 genes were up-regulated and 323 genes were down-regulated in primary and meta-static tumours compared with purified islets (see Supplementary Table 1
; http://erc.endocrinology-journals.org/content/vol13/issue2/).
By comprehensive literature and database searching, we identified only 20 of the 667 up-regulated genes as being previously described in PETs, including tumour protein p53 (TP53) (Lam & Lo 1998), fibronectin (Maitra et al. 2003), elongation of very long chain fatty acid-like 2 (Bloomston et al. 2004), coagulation factor V (Hansel et al. 2004), mitogen activated protein kinase (MAPK3) (Guo et al. 2003), chorionic gonadotrophin-ß (Baudin et al. 1999) and cerebral cavernous malformations 1 (Dilley et al. 2005). An additional 177 genes have already been described in cancer types other than PETs, with findings confirming up-regulation for 63 of them, including genes such as NOTCH Homologue 3 (NOTCH3), LCK, SCF, neuropeptide Y receptor Y1 and the apoptosis inhibitors BCL-2 antagonist of cell death (BAD) and baculoviral IAP repeat containing 1 (BIRC1).
The most frequent gene ontology molecular function classifiers for the up-regulated genes are detailed in Fig. 1
and are binding (159 genes, 24% of total) and catalytic activity (114 genes, 17% of total). Of the up-regulated genes with binding activity, 60 had a DNA-binding activity and 49 a protein-binding activity, including receptor binding for nine of them. Almost all the 79 genes related to signal transducer activity had a receptor activity. Amongst those genes with catalytic activity there were 38 with transferase, 32 with hydrolase and 27 with oxidoreductase activity. Of the 26 genes with a structural constituent activity, 15 were extracellular matrix constituents. Moreover, analysing both the gene ontology molecular function and cellular component data, we could classify 26 of 667 up-regulated genes as related to the extracellular matrix, most of which have been described previously in pancreatic adenocarcinoma but not in PETs, thus suggesting a similar cancerstroma crosstalk.
|
(Maitra et al. 2003) as well as vascular endothelial growth factor (VEGF) whose down-regulation in malignant PETs has been specifically reported (Couvelard et al. 2005). Of note, the finding of down-regulation of topo-isomerase-1 could be related to the reported ineffectiveness of topotecan in PETs (Ansell et al. 2004). A further 22 down-regulated genes have already been described as underexpressed in cancer types other than PETs, including the tumour suppressors cylindromatosis (turban tumour syndrome), forkhead box P1 and Kruppel-like factor 6.
The comparison of primary and metastatic lesions applying the same stringent criteria employed for the IvsPM comparison yielded no significant data. This is not surprising given the pattern of expression seen with the multivariate analysis. In fact, a hierarchical dendrogram (Fig. 2A
) shows not only a high similarity between all the matched primary and metastatic samples, but also an overall similar clustering of primaries and liver metastases. Also PDECs did not cluster differently from WDECs, while there was a distinct dissimilarity between the cell lines and the tumour samples, as is more clearly evident in the MDS plot (Fig. 2B
).
|
Protein Z-dependent protease inhibitor (SERPINA10)
In the microarray experiments, the expression of SERPINA10 was up-regulated in PETs compared with normal islets, with a fold difference of 6.34 and FDR corrected P value = 0.005. SERPINA10 expression did not differ between primary and metastatic lesions, and was not evident in the cell lines. Overexpression of SERPINA10 was confirmed by QRT-PCR as shown in Fig. 3
, with a good positive correlation with the array findings (r = 0.809; 95% CI = 0.52270.9312; P = 0.0017). No antibodies are presently available for SERPINA10 IHC.
|
|
cells in islets (Fig. 5A
|
|
|
|
| Discussion |
|---|
|
|
|---|
3 cm), together with the presence of liver metastases and the progression of disease in each single patient, were all known to be predictive of poor prognosis (Panzuto et al. 2005, Tomassetti et al. 2005), with both biotherapy and chemotherapy being poorly effective (OToole et al. 2004, Oberg & Eriksson 2005), as confirmed by the outcome of five of the seven patients we have had under care in the follow-up period. Many clinical and biomolecular studies of digestive NETs have previously been limited by the heterogeneity of the series, in terms of site, functional status, stage, clinical behaviour and proliferation index. In this context, and in contrast to other studies (Maitra et al. 2003, Bloomston et al. 2004, Hansel et al. 2004, Dilley et al. 2005), we have investigated uniformly aggressive, NF PET samples and their metastases by employing a complete Affymetrix platform.
Of the 990 individual dysregulated genes (Supplementary Table 1
) obtained comparing primary and metastatic lesions to islets, most have never been associated with PETs before. In particular, when comparing our results with those of previous expression profile studies and other publications conducted on PETs, we identified only 41 genes already described in this cancer type, none of them being reported in more than in a single study. The relatively poor concordance between different microarray studies is likely to be related to the different study designs, sample subtype, platforms and analysis employed, and is not a surprising finding, as already highlighted for pancreatic adenocarcinoma (Grutzmann et al. 2004). We have also analysed gene ontology function of the dysregulated genes, which suggests activation of different pathways, from changes in receptors and intracellular signalling to oxidative stress and stromal reaction.
As one of our aims was to provide potential novel biomarkers, we focused on genes previously not associated with PETs, which may be useful diagnostic or therapeutic targets, including genes for which specific inhibitors are already available.
SERPINA10 is a member of the serpin superfamily of proteinase inhibitors, normally synthesised by the liver and secreted into the plasma where it is involved in thrombosis (Han et al. 1998). We found SERPINA10 to be overexpressed in both our microarray and QRT-PCR experiments with 2-fold or higher overexpression in 57% of primary and 100% of metastatic lesions (Fig. 3
).
To date, more than 500 serpins have been identified and classified in six subgroups (Van Gent et al. 2003). SERPINA10 shares 33% homology with
-1-anti-trypsin (SERPINA1), the main blood plasma anti-proteolytic enzyme, which is the family archetype. SERPINA1 levels have been found to be increased in sera and tissues from different cancer types (Karashima et al. 1990, Higashiyama et al. 1992). SERPINA1 is degraded by matrix metallo-proteinases, resulting in production of a cleaved protein which seems to promote tumour progression (Kataoka et al. 1999) and, interestingly, was amongst the up-regulated genes in metastatic PETs (Hansel et al. 2004). While the expression of a number of serpins others than SERPINA1 has been reported in other tumour types, this is the first demonstration of the expression of SERPINA10 in a cancer. While the role of this gene in PETs remains unknown, specific profiles for plasma levels of different serpins have been reported (Wojtukiewicz et al. 1998), and in our experiments
-1-antichymotrypsin (SERPINA3), another serpin commonly dysregulated in cancers (Bernacka et al. 1998), was down-regulated. It would therefore be of interest to evaluate whether specific changes in circulating levels of SERPINA10 (and other SERPINs) occur in PET patients, and their possible relation with tumour stage and response to therapy.
BIN1 may represent another valuable biomarker for PETs. BIN1 was described initially through its ability to inhibit c-Myc-driven transformation, and since then has been reported to have a tumour suppressor activity, especially in prostate cancer (Ge et al. 2000). However, it has become clear that there are a number of different isoforms of BIN1 which present with specific tissue distributions and distinct functions (Wechsler-Reya et al. 1997, DuHadaway et al. 2003). Nuclear BIN1, as found in the prostate and breast, has a tumour suppressor activity due to an ability to activate caspase-independent cell death. In contrast, cytosolic expression of BIN1 is seen in quiescent brain cells. The latter BIN1 isoform has been alternatively named amphiphysin II, given the similarity with the neuronal protein involved in synaptic vesicle endocytosis. Of note, amphiphysins have been described in other neuroendocrine cells, such as enterochromaffin-like cells (Zanner et al. 2004) and adrenocorticotrophin-secreting cells (Sarret et al. 2004), and seem to play a part in the endocytic processes, but no BIN1 isoforms have been described in the pancreas previously.
Validation of our microarray results by means of QRT-PCR and IHC suggests that cytoplasmic forms of BIN1 related to endocytosis are prevalent in islet cells, and that they are strongly overexpressed in PETs (Fig. 4
). By investigation at the protein level we could detect BIN1 only in the subset of
cells in normal islets, while its expression was extended to the vast majority of tumour cells in some two-thirds of PETs (Fig. 5
). Notably, only one of the 15 non-pancreatic NETs evaluated stained positive for BIN1. This latter finding, together with the higher positivity for BIN1 observed in PET metastases, suggests a possible clinical utility for BIN1 immunostaining in the diagnosis of distant metastases with neuroendocrine features, as a predictor of a pancreatic origin. Indeed, some 10% of NETs present with liver metastases only, with no primary tumour found at the time of diagnosis, and immunohistochemical markers are employed to facilitate the diagnosis of the unknown primary. The higher percentage of BIN1 positivity in NF PETs, and in those samples negative for pancreatic hormones, makes this prospect as a marker for pancreatic origin even more interesting.
The overexpression of the src-like kinase LCK (p56LCK) is particularly relevant, and offers a potential novel therapeutic target for PETs. LCK is an src-like non-receptor protein tyrosine kinase, expressed mainly in T lymphocytes and thymocytes (Anderson et al. 1994). LCK is also aberrantly expressed in different cancer types and has been associated with a more aggressive tumour behaviour (Veillette et al. 1987, Nakamura et al. 1996). In our microarray experiments, as confirmed by QRT-PCR (Fig. 6
), RNA levels of LCK were up-regulated similarly in primary and metastatic PET samples, with some expression also seen in the cell lines analysed. LCK protein expression was seen at the plasma membrane of normal islet cells, with a more prevalent and intense cytoplasmic staining in 43% of primary and 66% of liver metastasis samples. The reasons for the presence of cytoplasmic LCK immunoreactivity in transformed but not in normal islet cells are unclear. One may speculate that this is the result of an overproduction of the protein, with consequent accumulation before targeting to the plasma membrane. Alternatively, it is possible that LCK proteins in PETs are affected by mutations that correct palmitoylation or myristoylation, which are critical for its localization (Bijlmakers et al. 1999). As a number of inhibitors of the src family are available and have been successfully tested in different cancer models, including pancreatic adenocarcinoma (Yezhelyev et al. 2004), LCK and/or other similar kinases may also represent therapeutic targets for PETs. Moreover, the concomitant overexpression of the KIT-ligand stem cell factor (SCF) for which LCK can be a downstream effector (Krystal et al. 1998) is also of potential interest, as KIT expression has previously been described in PETs and therapy with inhibitors proposed (Fjallskog et al. 2003).
BST2, also named HMI.24 antigen, another gene whose expression was validated by QRT-PCR (Fig. 8
), is a transmembrane protein expressed by several bone marrow stromal cell lines and fibroblasts (Ishikawa et al. 1995), and overexpressed in myeloma cells and in several solid tumour cell lines showing elevated invasive capacity (Walter-Yohrling et al. 2003). Overexpression of BST2 has also been described in pancreatic adenocarcinoma in a recent meta-analysis of expression profile studies (Grutzmann et al. 2005). Notably, a humanised anti-HM1.24 antibody has been developed and employed in clinical trials of multiple myeloma patients (Ozaki et al. 1999), and immunotherapy against HM1.24 is being developed (Rew et al. 2005). Further investigations of the expression and function of BST2 in PETs are warranted to establish whether it may represent a suitable target for therapy.
As the mechanism by which metastatic disease occurs is far from being clear, a second aim of this study was to explore the genetic abnormalities that differentiate primary from metastatic lesions. The two current hypotheses suggest either additional genetic changes in a subset of cells in primary tumours, which acquire the ability to metastasise (Fidler & Hart 1982), or that the metastatic ability of a tumour is an early event in the transformation process with cells of the primary tumour already carrying the metastatic signatures. Therefore, primary and metastatic lesions should be strikingly similar (Bernards & Weinberg 2002). The second theory has been supported by recent microarray studies in colorectal (Koehler et al. 2004) and breast cancer (Hao et al. 2004, Lahdesmaki et al. 2004) where similar profiles for matched primary and metastatic lesions were observed, and which suggest a stable genetic portrait for cancer during progression (Lacroix et al. 2004). Our current results are also in keeping with this hypothesis, as no differentially expressed genes able to distinguish primary from metastatic lesions, with all lesions clustering together, were identified (Fig. 2
).
In our analysis, we employed isolated islets as a reference, these probably represent the best control one can realistically obtain for PETs. However, the possibility that some transcriptional difference will arise simply from the fact that islets contain different cell types, while PETs stem from a single progenitor cell, has to be considered, and makes validation of any candidate mandatory.
Finally, in the present paper, we have obtained for the first time the expression profiles of the only two human PET cell lines presently available, and of the pancreatic carcinoid cell line BON, and observed their clear separation from the tissue samples, as reported in other tissue/cell systems (Hess et al. 2001). This again raises a caution against extrapolating from data obtained in in vitro studies using cell lines.
In conclusion, we have provided a comprehensive list of differentially expressed genes in a uniform series of malignant NF PETs with very aggressive behaviour. A number of the dysregulated genes, including those validated in the study, deserve further in-depth study as potentially promising candidates for the developement of new diagnostic and treatment strategies. The analysis of liver metastases revealed a previously unknown high level of similarity with the primary lesions, suggesting accumulation of most genetic abnormalities in the primary tumour. Confirmation of these results in other series of malignant PETs and primary and metastatic lesions obtained in other NETs, such as carcinoids, are needed to improve our knowledge of these relatively uncommon neoplasms. Furthermore, comparison of the present dataset with expression profiles of other entities that present with similar radiologic and clinical appearance, such as pancreatic adenocarcinoma and chronic pancreatitis, may help in identifying clinically relevant biomarkers for differential diagnosis.
| Acknowledgements |
|---|
| References |
|---|
|
|
|---|
Ansell SM, Mahoney MR, Green EM & Rubin J 2004 Topotecan in patients with advanced neuroendocrine tumors: a phase II study with significant hematologic toxicity. American Journal of Clinical Oncology 27 232235.
Baudin E, Bidart JM, Rougier P, Lazar V, Ruffe P, Ropers J, Ducreux M, Troalen F, Sabourin JC & Comoy E 1999 Screening for multiple endocrine neoplasia type 1 and hormonal production in apparently sporadic neuroendocrine tumors. Journal of Clinical Endocrinology and Metabolism 84 6975.
Benjamini Y & Hochberg Y 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society 57 289300.
Bernacka K, Kuryliszyn-Moskal A & Sierakowski S 1998 The levels of alpha 1-antitrypsin and alpha 1-antichymotrypsin in the sera of patients with gastrointestinal cancers during diagnosis. Cancer 15 11881193.
Bernards R & Weinberg RA 2002 A progression puzzle. Nature 418 823.[CrossRef][Medline]
Bijlmakers MJ & Marsh M 1999 Trafficking of an acylated cytosolic protein: newly synthetized p56lck travels to the plasma membrane via exocytic pathway. Journal of Cell Biology 145 457468.
Bloomston M, Durkin A, Yang I, Rojiani M, Rosemurgy AS, Enkmann S, Yeatman TJ & Zervos EE 2004 Identification of molecular markers specific for pancreatic neuroendocrine tumors by genetic profiling of core biopsies. Annals of Surgical Oncology 11 413419.[CrossRef][Web of Science][Medline]
Bolstad BM, Irizarry RA, Astrand M & Speed TP 2003 A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19 185193.
Capurso G, Crnogorac-Jurcevic T, Milione M, Panzuto F, Campanini N, Dowen SE, Di Florio A, Sette C, Bordi C, Lemoine NR et al. 2005 Peanut-like 1 (Septin 5) gene expression in normal and neoplastic human endocrine pancreas. Neuroendocrinology 81 311321.[CrossRef][Web of Science][Medline]
Corleto VD, Delle Fave G & Jensen RT 2002 Molecular insights into gastrointestinal neuroendocrine tumours: importance and recent advances. Digestive and Liver Disease 34 668680.[CrossRef][Web of Science][Medline]
Couvelard A, OToole D, Turley H, Leek R, Sauvanet A, Degott C, Ruszniewski P, Belghiti J, Harris AL & Gatter K 2005 Microvascular density and hypoxia-inducible factor pathway in pancreatic endocrine tumours: negative correlation of microvascular density and VEGF expression with tumour progression. British Journal of Cancer 92 94101.[CrossRef][Web of Science][Medline]
Crnogorac-Jurcevic T, Missiaglia E, Blaveri E, Gangeswaran R, Jones M, Terris B, Costello E, Neoptolemos JP & Lemoine NR 2003 Molecular alterations in pancreatic carcinoma: expression profiling shows that dysregulated expression of S100 genes is highly prevalent. Journal of Pathology 201 6374.[CrossRef][Web of Science][Medline]
Dilley WG, Kalyanaraman S, Verma S, Cobb JP, Laramie JM & Lairmore TC 2005 Global gene expression in neuroendocrine tumors from patients with MEN-I syndrome. Molecular Cancer 4 9.[CrossRef][Medline]
DuHadaway JB, Lynch FJ, Brisbay S, Bueso-Ramos C, Troncoso P, McDonnell T & Prendergast GC 2003 Immunohistochemical analysis of BIN1/amphiphysin II in human tissues: diverse sites of nuclear expression and losses in prostate cancer. Journal of Cellular Biochemistry 88 635642.[CrossRef][Medline]
Fidler IJ & Hart IR 1982 Biological diversity in metastatic neoplasms: origins and implications. Science 217 893895.
Fjallskog ML, Lejonklou MH, Oberg KE, Eriksson BK & Janson ET 2003 Expression of molecular targets for tyrosine kinase receptor antagonists in malignant endocrine pancreatic tumors. Clinical Cancer Research 9 14691473.
Ge K, Minhas F, Duhadaway J, Mao NC, Wilson D, Buccafusca R, Sakamuro D, Nelson P, Malkowicz SB & Tomaszewski J 2000 Loss of heterozygosity and tumor suppressor activity of BIN1 in prostate carcinoma International Journal of Cancer 86 155161.[CrossRef][Web of Science][Medline]
Grutzmann R, Saeger HD, Luttges J, Schackert HK, Kalthoff H, Kloppel G & Pilarsky C 2004 Microarray-based gene expression profiling in pancreatic ductal carcinoma: status quo and perspectives. International Journal of Colorectal Diseases 19 401413.
Grutzmann R, Boriss H, Ammerpohl O, Luttges J, Kalthoff H, Schackert HK, Kloppel G, Saeger HD & Pilarsky C 2005 Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes. Oncogene 24 50795088.[CrossRef][Web of Science][Medline]
Guo SS, Wu X, Shimoide AT, Wong J, Moatamed F & Sawicki MP 2003 Frequent overexpression of cyclin D1 in sporadic pancreatic endocrine tumours. Journal of Endocrinology 179 7379.[Abstract]
Han X, Fiehler R & Broze GJ Jr 1998 Isolation of a protein Z-dependent plasma ptotease inhibitor. PNAS 95 92509255.
Hansel DE, Rahman A, House M, Ashfaq R, Berg K, Yeo CJ & Maitra A 2004 Met proto-oncogene and insulin-like growth factor binding protein 3 overexpression correlates with metastatic ability in well-differentiated pancreatic endocrine neoplasms. Clinical Cancer Research 10 61526158.
Hao X, Sun B, Hu L, Lahdesmaki H, Dunmire V, Feng Y, Zhang SW, Wang H, Wu C & Wang H 2004 Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis. Cancer 100 11101122.[CrossRef][Medline]
Hess KR, Fuller GN, Rhee CH & Zhang W 2001 Statistical pattern analysis of gene expression profiles for glioblastoma tissues and cell lines. International Journal of Molecular Medicine 8 183188.[Medline]
Higashiyama M, Doi O, Kodama K, Yokouchi H & Tateishi R 1992 An evaluation of the prognostic significance of
-1-antitrypsin expression in adenocarcinoma of the lung: an immunohistochemical analysis. British Journal of Cancer 65 300302.[Web of Science][Medline]
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B & Speed TP 2003 Summaries of A3ymetrix GeneChip probe level data. Nucleic Acids Research 31 e15.
Ishikawa J, Kaisho T, Tomizawa H, Lee BO, Kobune Y, Inazawa J, Oritani K, Itoh M, Ochi T, Ishihara K et al. 1995 Molecular cloning and chromosomal mapping of a bone marrow stromal cell surface gene, BST2, that may be involved in pre-B-cell growth. Genomics 26 527534.[CrossRef][Web of Science][Medline]
Jin L, Wang H, Narita T, Kikuno R, Ohara O, Shihara N, Nishigori T, Horikawa Y & Takeda J 2003 Expression profile of mRNAs from human pancreatic islet tumors. Journal of Molecular Endocrinology 31 519528.[Abstract]
Kaltsas GA, Besser GM & Grossman AG 2004 The diagnosis and management of advanced neuroendocrine tumors. Endocrine Reviews 25 458511.
Karashima S, Kataoka H, Itoh H, Maruyama R & Koono M 1990 Prognostic significance of alfa-1-antitrypsin in early stage of colorectal carcinomas. International Journal of Cancer 45 244250.[Medline]
Kataoka H, Uchino H, Iwamura T, Seiki M, Nabeshima K & Koono M 1999 Enhanced tumor growth and invasiveness in vivo by a carboxyl-terminal fragment of alfa1-proteinase inhibitor generated by matrix metalloproteinases. American Journal of Pathology 154 457468.
Koehler A, Bataille F, Schmid C, Ruemmele P, Waldeck A, Blaszyk H, Hartmann A, Hofstaedter F & Dietmaier W 2004 Gene expression profiling of colorectal cancer and metastases divides tumours according to their clinicopathological stage. Journal of Pathology 204 6574.[CrossRef][Medline]
Krystal GW, DeBerry CS, Linnekin D & Litz J 1998 Lck associates with and is activated by Kit in a small cell lung cancer cell line: inhibition of SCF-mediated growth by the Src family kinase inhibitor PP1. Cancer Research 58 46604666.
Lacroix M, Toillon RA & Leclercq G 2004 Stable portrait of breast tumors during progression: data from biology, pathology and genetics. Endocrine-Related Cancer 11 497522.
Lahdesmaki H, Hao X, Sun B, Hu L, Yli-Harja O, Shmulevich I & Zhang W 2004 Distinguishing key biological pathways between primary breast cancers and their lymph node metastases by gene function-based clustering analysis. International Journal of Oncology 24 15891596.[Medline]
Lam KY & Lo CY 1998 Role of p53 tumor suppressor gene in pancreatic endocrine tumors of Chinese patients. American Journal of Gastroenterology 93 12321235.[CrossRef][Medline]
Maitra A, Hansel DE, Argani P, Ashfaq R, Rahman A, Naji A, Deng S, Geradts J, Hawthorne L & House MG 2003 Global expression analysis of well-differentiated pancreatic endocrine neoplasms using oligonucleotide microarrays. Clinical Cancer Research 95 988995.
Nakamura K, Chijiiwa Y & Nawata H 1996 Augmented expression of LCK message directed from the downstream promoter in human colorectal cancer specimens. European Journal of Cancer 32 14011407.
Oberg K & Eriksson B 2005 Endocrine tumours of the pancreas. Best practice and research. Clinical Gastroenterology 19 753781.
OToole D, Hentic O, Corcos O & Ruszniewski P 2004 Chemotherapy for gastro-enteropancreatic endocrine tumours. Neuroendocrinology 80 (Suppl 1) 7984.[Medline]
Ozaki S, Kosaka M, Wakahara Y, Ozaki Y, Tsuchiya M, Koishihara Y, Goto T & Matsumoto T 1999 Humanized anti-HM1.24 antibody mediates myeloma cell cytotoxicity that is enhanced by cytokine stimulation of effector cells. Blood 93 39223930.
Panzuto F, Falconi M, Nasoni S, Angeletti S, Moretti A, Bezzi M, Gualdi G, Pollettini E, Sciuto R, Festa A et al. 2003 Staging of digestive endocrine tumours using helical computer tomography and somatostatin receptor scintigraphy. Annals of Oncology 14 586591.
Panzuto F, Nasoni S, Falconi M, Corleto VD, Capurso G, Cassetta S, Di Fonzo M, Tornatore V, Milione M, Angeletti S et al. 2005 Prognostic factors and survival in endocrine tumor patients: comparison between gastrointestinal and pancreatic localization. Endocrine-Related Cancer 12 10831092.
Plockinger U, Rindi G, Arnold R, Eriksson B, Krenning EP, de Herder WW, Goede A, Caplin M, Oberg K & Reubi JC 2004 Guidelines for the diagnosis and treatment of neuroendocrine gastrointestinal tumours. A consensus statement on behalf of the European Neuroendocrine Tumour Society (ENETS). Neuroendocrinology 80 394424.[CrossRef][Web of Science][Medline]
Rew SB, Peggs K, Sanjuan I, Pizzey AR, Koishihara Y, Kawai S, Kosaka M, Ozaki S, Chain B & Yong KL 2005 Generation of potent antitumor CTL from patients with multiple myeloma directed against HM1.24. Clinical Cancer Research 11 33773384.
Ricordi C, Lacy PE, Finke EH, Olack BJ & Scharp DW 1988 Automated method for isolation of human pancreatic islets. Diabetes 37 413420.[Abstract]
Sarret P, Esdaile MJ, McPherson PS, Schonbrunn A, Kreienkamp HJ & Beaudet A 2004 Role of amphiphysin II in somatostatin receptor trafficking in neuroendocrine cells. Journal of Biological Chemistry 279 80298037.
Solcia E, Klö ppel G & Sobin LH in collaboration with 9 pathologists from 4 countries 2000 Histological Typing of Endocrine Tumors, edn 2, pp 15. World Health Organization. Berlin, Heidelberg, New York: Springer Verlag.
Tomassetti P, Campana D, Piscitelli L, Casadei R, Santini D, Nori F, Morselli-Labate AM, Pezzilli R & Corinaldesi R 2005 Endocrine pancreatic tumors: factors correlated with survival. Annals of Oncology 16 18061810.
Van Gent D, Sharp P, Morgan K & Kalsheka N 2003 Serpins: structure, function and molecular evolution. International Journal of Biochemistry and Cell Biology 35 15361547.[CrossRef][Web of Science][Medline]
Veillette A, Foss FM, Sausville EA, Bolen JB & Rosen N 1987 Expression of the lck tyrosine kinase gene in human colon carcinoma and other non-lymphoid human tumor cell lines. Oncogene Research 1 357374.[Web of Science][Medline]
Walter-Yohrling J, Cao X, Callahan M, Weber W, Morgenbesser S, Madden SL, Wang C & Teicher BA 2003 Identification of genes expressed in malignant cells that promote invasion. Cancer Research 63 89398947.
Wang XC, Hu RM, Xu SY, Song HD, Mao YF, Fan HY, Yu F, Mou B, Gu YY, Xu LQ et al. 2004 Gene expression profiling in human insulinoma tissue: genes involved in insulin secretion pathway and cloning of novel full-length cDNAs. Endocrine-Related Cancer 11 295303.[Abstract]
Wechsler-Reya R, Sakamuro D, Zhang J, Duhadaway J & Prendergast GC 1997 Structural analysis of the human BIN1 gene. Journal of Biological Chemistry 50 3145331458.
White SA, Davies JE, Pollard C, Swift SM, Clayton HA, Sutton CD, Weymss-Holden S, Musto PP, Berry DP & Dennison AR 2001 Pancreas resection and islet autotransplantation for end-stage chronic pancreatitis. Annals of Surgery 233 423431.[CrossRef][Medline]
Wojtukiewicz MZ, Rucinska M, Kloczko J, Dib A & Galar M 1998 Profiles of plasma serpins in patients with advanced malignant melanoma, gastric cancer and breast cancer. Haemostasis 28 713.[Medline]
Yezhelyev MV, Koehl G, Guba M, Brabletz T, Jauch KW, Ryan A, Barge A, Green T, Fennell M & Bruns CJ 2004 Inhibition of SRC tyrosine kinase as treatment for human pancreatic cancer growing orthotopically in nude mice. Clinical Cancer Research 10 80288036.
Zanner R, Gratzl M & Prinz C 2004 Expression of the endocytic proteins dynamin and amphiphysin in rat gastric enterochromaffin-like cells. Journal of Cell Science 117 23692376.
This article has been cited by other articles:
![]() |
E. Missiaglia, I. Dalai, S. Barbi, S. Beghelli, M. Falconi, M. della Peruta, L. Piemonti, G. Capurso, A. Di Florio, G. delle Fave, et al. Pancreatic Endocrine Tumors: Expression Profiling Evidences a Role for AKT-mTOR Pathway J. Clin. Oncol., January 10, 2010; 28(2): 245 - 255. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Masuyama, T. Kuronita, R. Tanaka, T. Muto, Y. Hirota, A. Takigawa, H. Fujita, Y. Aso, J. Amano, and Y. Tanaka HM1.24 Is Internalized from Lipid Rafts by Clathrin-mediated Endocytosis through Interaction with {alpha}-Adaptin J. Biol. Chem., June 5, 2009; 284(23): 15927 - 15941. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Kennah, A. Ringrose, L. L. Zhou, S. Esmailzadeh, H. Qian, M.-w. Su, Y. Zhou, and X. Jiang Identification of tyrosine kinase, HCK, and tumor suppressor, BIN1, as potential mediators of AHI-1 oncogene in primary and transformed CTCL cells Blood, May 7, 2009; 113(19): 4646 - 4655. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. R Halfdanarson, J. Rubin, M. B Farnell, C. S Grant, and G. M Petersen Pancreatic endocrine neoplasms: epidemiology and prognosis of pancreatic endocrine tumors Endocr. Relat. Cancer, June 1, 2008; 15(2): 409 - 427. [Abstract] [Full Text] [PDF] |
||||
![]() |
E.-M. Duerr, Y. Mizukami, A. Ng, R. J Xavier, H. Kikuchi, V. Deshpande, A. L Warshaw, J. Glickman, M. H Kulke, and D. C Chung Defining molecular classifications and targets in gastroenteropancreatic neuroendocrine tumors through DNA microarray analysis Endocr. Relat. Cancer, March 1, 2008; 15(1): 243 - 256. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Di Florio, G. Capurso, M. Milione, F. Panzuto, R. Geremia, G. D. Fave, and C. Sette Src family kinase activity regulates adhesion, spreading and migration of pancreatic endocrine tumour cells Endocr. Relat. Cancer, March 1, 2007; 14(1): 111 - 124. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |